2021
- The Implications of ncRNAs in the Development of Human Diseases .
Revista : non-coding RNA DOI : 10.3390/ncrna7010017
- Mapping the entire functionally active endometrial microbiota .
Revista : Human Reproduction DOI : 10.1093/humrep/deaa372
- HDAC6 regulates expression of the oncogenic driver EWSR1-FLI1 through the EWSR1 promoter in Ewing sarcoma .
Revista : bioRxiv DOI : 10.1101/2021.01.04.425179
2020
-
The PARP Inhibitor Olaparib Modulates the Transcriptional Regulatory Networks of Long Non-Coding RNAs during Vasculogenic Mimicry
.
Autor(es)
: Mónica Fernández-Cortés,
Eduardo Andrés-León
, Francisco Javier Oliver
.
Revista
: Cells
DOI
:
10.3390/cells9122690
-
An inducible ectopic expression system of EWSR1-FLI1 as a tool for understanding Ewing sarcoma oncogenesis
.
Autor(es)
: Daniel J García-Domínguez, Lourdes Hontecillas-Prieto,
Eduardo Andrés-León
, Sara Sánchez-Molina, Pablo Rodríguez-Núñez, Francisco J Morón, Nabil Hajji, Carlos Mackintosh, Enrique de Álava
.
Revista
: PloS one
DOI
:
10.1371/journal.pone.0234243
-
Single cell profiling of COVID-19 patients: an international data resource from multiple tissues
.
Autor(es)
: Ballestar, E. Farber, D.L. Glover, S. Horwitz, B. Meyer, K. Nikolić, M. Ordovas-Montanes, J. Sims, P. Shalek, A. Vandamme, N. Vandekerckhove, L. Vento-Tormo, R. Villani, A.C. Handfield, L.F. Rodríguez-Ubreva, J. Ciudad, L. Godoy-Tena, G. Porter, T. Oszlanczi, A. Prigmore, E. Richardson, L. Gottgens, B. Calero-Nieto, F. Wilson, N. Marchese, D. Heyn, H,
Eduardo Andrés-León
, Acosta-Herrera, M. Martin, J. et al.
.
Revista
: medRxiv
DOI
:
10.1101/2020.11.20.20227355
-
Epigenomics and Transcriptomics of Systemic Sclerosis CD4+ T cells reveal Long Range Dysregulation of Key Inflammatory Pathways mediated by disease-associated Susceptibility Loci
.
Autor(es)
: Tianlu Li, Lourdes Ortiz,
Eduardo Andrés-León
, Biola Javierre, Elena Lopez-Isac, Alfredo Guillen-Del-Castillo, Carmen P Simeon-Aznar, Esteban Ballestar, Javier Martin
.
Revista
: Genome Medicine
DOI
:
10.1186/s13073-020-00779-6
-
Evidence for a role of phenotypic mutations in virus adaptation
.
Autor(es)
: Raquel Luzon-Hidalgo, Valeria A Risso, Asuncion Delgado,
Eduardo Andrés-León
, Beatriz Ibarra-Molero, Jose M Sanchez-Ruiz
.
Revista
: bioRxiv
DOI
:
10.1101/2020.08.21.261495
2019
-
SUMOylated SNF2PH promotes variant surface glycoprotein expression in bloodstream trypanosomes
.
Autor(es)
: Andreu Saura, Paula A Iribarren, Domingo Rojas-Barros, Jean M Bart, Diana López-Farfán,
Eduardo Andrés-León
, Isabel Vidal‐Cobo, Cordula Boehm, Vanina E Alvarez, Mark C Field, Miguel Navarro
.
Revista
: EMBO reports
DOI
:
10.15252/embr.201948029
-
A parasite biomarker set for evaluating benznidazole treatment efficacy in patients with chronic asymptomatic Trypanosoma cruzi infection
.
Autor(es)
: Adriana Egui, M Carmen Thomas, Ana Fernandez-Villegas, Elena Pérez-Antón, Inmaculada Gómez, Bartolomé Carrilero, Ángel Del Pozo, Maialen Ceballos,
Eduardo Andrés-León
, Miguel Ángel López-Ruz, Eusebio Gainza, Enrique Oquiñena, Manuel Segovia, Manuel Carlos López
.
Revista
: Antimicrobial agents and chemotherapy
DOI
:
10.1128/AAC.02436-18
-
Detection of novel fusion-transcripts by RNA-Seq in T-cell lymphoblastic lymphoma
.
Autor(es)
: Pilar López-Nieva, Pablo Fernández-Navarro, Osvaldo Graña-Castro,
Eduardo Andrés-León
, Javier Santos, María Villa-Morales, María Ángeles Cobos-Fernández, Laura González Sánchez, Marcos Malumbres, María Salazar-Roa, José Fernández-Piqueras
.
Revista
: Scientific reports
DOI
:
10.1038/s41598-019-41675-3
-
Pluripotency factors regulate the onset of Hox cluster activation in the early embryo
.
Autor(es)
: Elena Lopez-Jimenez, Julio Sainz de Aja, Claudio Badia-Careaga, Antonio Barral, Isabel Rollan, Raquel Rouco, Elisa Santos, María Tiana, Jesus Victorino, Hector Sanchez-Iranzo, Rafael D Acemel, Carlos Torroja, Javier Adan,
Eduardo Andrés-León
, Jose Luis Gomez-Skarmeta, Giovanna Giovinazzo, Fatima Sanchez-Cabo, Miguel Manzanares
.
Revista
: BioRxiv
DOI
:
10.1101/564658
-
miARma-Seq, a comprehensive pipeline for the simultaneous study and integration of miRNA and mRNA expression data
.
Autor(es)
:
Eduardo Andrés-León
, Ana M. Rojas
.
Revista
: Methods
DOI
:
10.1016/j.ymeth.2018.09.002
2018
-
RNA sequencing and Prediction Tools for Circular RNAs Analysis
.
Autor(es)
: Elena López-Jiménez, Ana M Rojas,
Eduardo Andrés-León.
Revista
: Advances in Experimental Medicine and Biology.
DOI
:
10.1007/978-981-13-1426-1_2
-
Exosomes derived from mesenchymal stem cells enhance radiotherapy-induced cell death in tumor and metastatic tumor foci
.
Autor(es)
: Virgínea de Araujo Farias, Francisco O’Valle, Santiago Serrano-Saenz, Per Anderson,
Eduardo Andrés-León
, Jesús López-Peñalver, Isabel Tovar, Ana Nieto, Ana Santos, Francisco Martín, José Expósito, F Javier Oliver, José Mariano Ruiz de Almodóvar
.
Revista
: Molecular Cancer
DOI
:
10.1186/s12943-018-0867-0
-
SP140 regulates the expression of immune-related genes associated with multiple sclerosis and other autoimmune diseases by NF-κ B inhibition
.
Autor(es)
: Mohamad Karaky, María Fedetz, Victor Potenciano,
Eduardo Andrés-León
, Anna Esteve Codina, Cristina Barrionuevo, Antonio Alcina, Fuencisla Matesanz.
Revista
: Human molecular genetics.
DOI
:
10.1093/hmg/ddy284
-
CD38 promotes pristane-induced chronic inflammation and increases susceptibility to experimental lupus by an apoptosis-driven and TRPM2-dependent mechanism
.
Autor(es)
: Sonia García-Rodríguez, Antonio Rosal-Vela, Davide Botta, Luz M Cumba Garcia, Esther Zumaquero, Verónica Prados-Maniviesa, Daniela Cerezo-Wallis, Nicola Lo Buono, José-Ángel Robles-Guirado, Salvador Guerrero, Elena González-Paredes,
Eduardo Andrés-León
, Ángel Corbí, Matthias Mack, Friedrich Koch-Nolte, Ramón Merino, Mercedes Zubiaur, Frances E Lund, Jaime Sancho.
Revista
: Scientific Reports.
DOI
:
10.1038/s41598-018-21337-6
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The RNA Polymerase II Factor RPAP1 Is Critical for Mediator-Driven Transcription and Cell Identity
.
Autor(es)
: Cian J Lynch, Raquel Bernad, Isabel Calvo, Sandrina Nóbrega-Pereira, Sergio Ruiz, Nuria Ibarz, Ana Martinez-Val, Osvaldo Graña-Castro, Gonzalo Gómez-López,
Eduardo Andrés-León
, Vladimir Espinosa Angarica, Antonio del Sol, Sagrario Ortega, Oscar Fernandez-Capetillo, Enrique Rojo, Javier Munoz, Manuel Serrano.
Revista
: Cell Reports.
DOI
:
10.1016/j.celrep.2017.12.062
2017
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Novel miRNA-mRNA interactions conserved in essential cancer pathways
.
Autor(es)
:
Eduardo Andrés-León
, Ildefonso Cases, Sergio Alonso, Ana M Rojas
.
Revista
: Scientific Reports
DOI
:
10.1038/srep46101
-
Prediction of miRNA–mRNA Interactions Using miRGate
.
Autor(es)
:
Eduardo Andrés-León
, Gonzalo Gómez-López, David G Pisano.
Revista
: Methods in Molecular Biology
DOI
:
10.1007/978-1-4939-6866-4_15
2016
-
Impact of DLK1-DIO3 imprinted cluster hypomethylation in smoker patients with lung cancer
.
Autor(es)
: Sonia Molina-Pinelo, Ana Salinas, Nicolás Moreno-Mata, Irene Ferrer, Rocío Suarez,
Eduardo Andrés-León
, Manuel Rodríguez-Paredes, Julian Gutekunst, Eloisa Jantus-Lewintre, Carlos Camps, Amancio Carnero, Luis Paz-Ares.
Revista
: Oncotarget
DOI
:
10.18632%2Foncotarget.10611
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DDRprot: a database of DNA damage response-related proteins
.
Autor(es)
:
Eduardo Andrés-León
, Ildefonso Cases, Aida Arcas, Ana M Rojas.
Revista
: Database
DOI
:
10.1093/database/baw123
-
miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
.
Autor(es)
:
Eduardo Andrés-León
, Rocío Núñez-Torres, Ana M Rojas
Revista
: Scientific Reports
DOI
:
10.1038/srep25749
-
MicroRNA deregulation in triple negative breast cancer reveals a role of miR-498 in regulating BRCA1 expression
.
Autor(es)
: Nerea Matamala, Maria Teresa Vargas, Ricardo González-Cámpora, Jose Ignacio Arias, Primitiva Menéndez,
Eduardo Andrés-León
, Kira Yanowsky, Ana Llaneza-Folgueras, Rebeca Miñambres, Beatriz Martínez-Delgado, Javier Benítez
.
Revista
: Oncotarget
DOI
:
10.18632/oncotarget.7705
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Prp40 and early events in splice site definition
.
Autor(es)
:
, Soraya Becerra,
Eduardo Andrés-León
, Silvia Prieto‐Sánchez, Cristina Hernández‐Munain, Carlos Suñé.
Revista
: Wiley Interdisciplinary Reviews: RNA
DOI
:
10.1002/wrna.1312
2015
-
The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons
.
Autor(es)
:José García-Martínez, Lidia Delgado-Ramos, Guillermo Ayala, Vicent Pelechano, Daniel A Medina, Fany Carrasco, Ramón González,
Eduardo Andrés-León
, Lars Steinmetz, Jonas Warringer, Sebastián Chávez, José E Pérez-Ortín
.
Revista
: Nucleic Acids Research
Volume:
2015.
DOI
:
10.1093/nar/gkv1512
-
Tumor MicroRNA Expression Profiling Identifies Circulating MicroRNAs for Early Breast Cancer Detection
.
Autor(es)
: Nerea Matamala, Vargas MT, González-Campora R, Miñambres R,
Eduardo Andrés-León
, Gonzalo Gómez-López, Beatriz
Martinez-Delgado, Javier Benítez
.
Revista
: Clinical Chemistry
Volume:
2015.
DOI
:
10.1373/clinchem.2015.238691
-
miRNA expression profiling of formalin-fixed paraffin-embedded (FFPE) hereditary breast tumors
.
Autor(es)
: Miljana Tanić, Kira Yanowski,
Eduardo Andrés-León
, Gonzalo Gómez-López, María Rodríguez-Pinilla Socorro, David G Pisano, Beatriz Martinez-Delgado, Javier Benítez
.
Revista
: Clinical Chemistry
Volume:
2015.
DOI
:
doi:10.1016/j.gdata.2014.11.008
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miRGate: a curated database of human, mouse and rat miRNA–mRNA targets
.
Autor(es)
:
Eduardo Andrés-León
, Daniel González Peña, Gonzalo Gómez-López and David G. Pisano.
Revista
: Database (Oxford)
Volume:
2015.
DOI
:
10.1093/database/bav035
2014
-
Lipoprotein(a) levels in familial hypercholesterolemia: an important predictor of cardiovascular disease independent of the type of LDL receptor mutation.
Autor(es)
: Alonso, Rodrigo;
Andrés-León, Eduardo
; Mata, Nelva; et al.
Revista
: Journal of the American College of Cardiology.
DOI
:
10.1016/j.jacc.2014.01.063
-
miRNA expression profiling of formalin-fixed paraffin-embedded (FFPE) hereditary breast tumors
.
Autor(es)
: Miljana Tanić, Kira Yanowski,
Eduardo Andrés-León
, Gonzalo Gómez-López, María Rodríguez-Pinilla Socorro, David G. Pisano, Beatriz
Martinez-Delgado, Javier Benítez
.
Revista
: Genomics Data.
DOI
:
10.1016/j.gdata.2014.11.008
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The Epstein Barr-encoded BART-6-3p microRNA affects regulation of cell growth and immuno response in Burkitt lymphoma.
Autor(es)
: Ambrosio, Maria Raffaella; Navari, Mohsen; Di Lisio, Lorena;
Andrés-León Eduardo
et al.
Revista
: Infectious Agents and Cancer.
DOI
:
10.1186/1750-9378-9-12
2013
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MicroRNA-based molecular classification of non-BRCA1/2 hereditary breast tumours.
Autor(es)
: Tanic, Miljana;
Andrés-León Eduardo
; Rodriguez-Pinilla, S. M.; et al.
Revista
: British Journal of Cancer.
DOI
: 10.1038/bjc.2013.612
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ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.
Autor(es)
: Frenkel-Morgenstern, Milana; Gorohovski, Alessandro; Lacroix, Vincent;
Mark Rogers, Kristina Ibanez, Cesar Boullosa,
Eduardo Andrés-León
, Asa Ben-Hur and Alfonso Valencia
.
Revista
: Nucleic Acids Research. D
OI:
10.1093/nar/gks1041
2012
-
Epstein-Barr virus microRNAs repress BCL6 expression in diffuse large B-cell lymphoma
Autor(es)
:
D Martín-Pérez, P Vargiu, S Montes-Moreno,
Eduardo Andrés-León
, S M Rodríguez-Pinilla, L D Lisio, N Martínez, R Rodríguez, M Mollejo, J
Castellvi, D G Pisano, M Sánchez-Beato, and M A Piris.
Revista
: Leukemia. D
OI:
10.1038/leu.2011.189
2010
-
Inference of Functional Relations in Predicted Protein Networks with a Machine Learning Approach.
Autor(es)
: Garcia-Jimenez, Beatriz; Juan, David; Ezkurdia, Iakes;
Eduardo Andrés-León
and Alfonso Valencia
.
Revista
: Plos One
DOI
:
10.1371/journal.pone.0009969
2009
-
EcID. A database for the inference of functional interactions in E. coli.
Autor(es)
:
Andrés-Leon, Eduardo
; Ezkurdia, Iakes; Garcia, Beatriz y Alfonso Valencia.
Revista
: Nucleic acids research.
DOI
: 10.1093/nar/gkn853
2008
-
Prediction of protein interaction based on similarity of phylogenetic trees.
Autor(es)
: Pazos, Florencio; Juan, David; Izarzugaza, Jose M G;
Eduardo Andrés-León
y Alfonso Valencia.
Revista
: Methods in molecular biology (Clifton, N.J.)
DOI
:
10.1007/978-1-59745-398-1_31
2007
-
CARGO: a web portal to integrate customized biological information.
Autor(es)
: Cases, Ildefonso; Pisano, David G.;
Andrés-León, Eduardo
; et al.
Revista
: Nucleic Acids Research.
DOI
:
10.1093/nar/gkm280
2006
-
Intelligent client for integrating bioinformatics services.
Autor(es)
:
Ismael Navas-Delgado, Maria del Mar Rojano-Muñoz, Sergio Ramírez, Antonio J. Pérez,
Eduardo Andrés-León
, Jose F. Aldana-Montes y
Oswaldo Trelles
Revista
: Bioinformatics.
DOI
:
10.1093/bioinformatics/bti740
2005
-
Evaluation of BioCreAtIvE assessment of task 2.
Autor(es)
: Blaschke, C;
Eduardo Andrés-León
, Krallinger, M y Alfonso Valencia.
Revista
: BMC Bioinformatics. D
OI:
10.1186/1471-2105-6-S1-S16
-
Text mining for metabolic pathways, signaling cascades, and protein networks.
Autor(es)
: Hoffmann, Robert; Krallinger, Martin;
Andrés-León, Eduardo
; et al.
Revista
: Science's STKE.
DOI
:
10.1126/stke.2832005pe21
- The PARP Inhibitor Olaparib Modulates the Transcriptional Regulatory Networks of Long Non-Coding RNAs during Vasculogenic Mimicry .
Revista : Cells DOI : 10.3390/cells9122690
- An inducible ectopic expression system of EWSR1-FLI1 as a tool for understanding Ewing sarcoma oncogenesis .
Revista : PloS one DOI : 10.1371/journal.pone.0234243
- Single cell profiling of COVID-19 patients: an international data resource from multiple tissues .
Revista : medRxiv DOI : 10.1101/2020.11.20.20227355
- Epigenomics and Transcriptomics of Systemic Sclerosis CD4+ T cells reveal Long Range Dysregulation of Key Inflammatory Pathways mediated by disease-associated Susceptibility Loci .
Revista : Genome Medicine DOI : 10.1186/s13073-020-00779-6
- Evidence for a role of phenotypic mutations in virus adaptation .
Revista : bioRxiv DOI : 10.1101/2020.08.21.261495
2019
- SUMOylated SNF2PH promotes variant surface glycoprotein expression in bloodstream trypanosomes .
Revista : EMBO reports DOI : 10.15252/embr.201948029
- A parasite biomarker set for evaluating benznidazole treatment efficacy in patients with chronic asymptomatic Trypanosoma cruzi infection .
Revista : Antimicrobial agents and chemotherapy DOI : 10.1128/AAC.02436-18
- Detection of novel fusion-transcripts by RNA-Seq in T-cell lymphoblastic lymphoma .
Revista : Scientific reports DOI : 10.1038/s41598-019-41675-3
- Pluripotency factors regulate the onset of Hox cluster activation in the early embryo .
Revista : BioRxiv DOI : 10.1101/564658
- miARma-Seq, a comprehensive pipeline for the simultaneous study and integration of miRNA and mRNA expression data .
Revista : Methods DOI : 10.1016/j.ymeth.2018.09.002
2018
- RNA sequencing and Prediction Tools for Circular RNAs Analysis .
Revista : Advances in Experimental Medicine and Biology. DOI : 10.1007/978-981-13-1426-1_2
- Exosomes derived from mesenchymal stem cells enhance radiotherapy-induced cell death in tumor and metastatic tumor foci .
Revista : Molecular Cancer DOI : 10.1186/s12943-018-0867-0
- SP140 regulates the expression of immune-related genes associated with multiple sclerosis and other autoimmune diseases by NF-κ B inhibition .
Revista : Human molecular genetics. DOI : 10.1093/hmg/ddy284
- CD38 promotes pristane-induced chronic inflammation and increases susceptibility to experimental lupus by an apoptosis-driven and TRPM2-dependent mechanism .
Revista : Scientific Reports. DOI : 10.1038/s41598-018-21337-6
- The RNA Polymerase II Factor RPAP1 Is Critical for Mediator-Driven Transcription and Cell Identity .
Revista : Cell Reports. DOI : 10.1016/j.celrep.2017.12.062
2017
- Novel miRNA-mRNA interactions conserved in essential cancer pathways .
Revista : Scientific Reports DOI : 10.1038/srep46101
- Prediction of miRNA–mRNA Interactions Using miRGate .
Revista : Methods in Molecular Biology DOI : 10.1007/978-1-4939-6866-4_15
2016
- Impact of DLK1-DIO3 imprinted cluster hypomethylation in smoker patients with lung cancer .
Revista : Oncotarget DOI : 10.18632%2Foncotarget.10611
- DDRprot: a database of DNA damage response-related proteins .
Revista : Database DOI : 10.1093/database/baw123
- miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis .
Revista : Scientific Reports DOI : 10.1038/srep25749
- MicroRNA deregulation in triple negative breast cancer reveals a role of miR-498 in regulating BRCA1 expression .
Revista : Oncotarget DOI : 10.18632/oncotarget.7705
- Prp40 and early events in splice site definition .
Revista : Wiley Interdisciplinary Reviews: RNA DOI : 10.1002/wrna.1312
2015
- The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons .
Revista : Nucleic Acids Research Volume: 2015. DOI : 10.1093/nar/gkv1512
- Tumor MicroRNA Expression Profiling Identifies Circulating MicroRNAs for Early Breast Cancer Detection .
Martinez-Delgado, Javier Benítez .
Revista : Clinical Chemistry Volume: 2015. DOI : 10.1373/clinchem.2015.238691
- miRNA expression profiling of formalin-fixed paraffin-embedded (FFPE) hereditary breast tumors .
Revista : Clinical Chemistry Volume: 2015. DOI : doi:10.1016/j.gdata.2014.11.008
- miRGate: a curated database of human, mouse and rat miRNA–mRNA targets .
Revista : Database (Oxford) Volume: 2015. DOI : 10.1093/database/bav035
2014
- Lipoprotein(a) levels in familial hypercholesterolemia: an important predictor of cardiovascular disease independent of the type of LDL receptor mutation. Autor(es) : Alonso, Rodrigo; Andrés-León, Eduardo ; Mata, Nelva; et al.
- miRNA expression profiling of formalin-fixed paraffin-embedded (FFPE) hereditary breast tumors .
Martinez-Delgado, Javier Benítez .
Revista : Genomics Data. DOI : 10.1016/j.gdata.2014.11.008
- The Epstein Barr-encoded BART-6-3p microRNA affects regulation of cell growth and immuno response in Burkitt lymphoma.
Revista : Infectious Agents and Cancer. DOI : 10.1186/1750-9378-9-12
2013
- MicroRNA-based molecular classification of non-BRCA1/2 hereditary breast tumours.
Revista : British Journal of Cancer. DOI : 10.1038/bjc.2013.612
- ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.
Revista : Nucleic Acids Research. D OI: 10.1093/nar/gks1041
2012
- Epstein-Barr virus microRNAs repress BCL6 expression in diffuse large B-cell lymphoma
Revista : Leukemia. D OI: 10.1038/leu.2011.189
2010
- Inference of Functional Relations in Predicted Protein Networks with a Machine Learning Approach.
Revista : Plos One DOI : 10.1371/journal.pone.0009969
2009
- EcID. A database for the inference of functional interactions in E. coli.
Revista : Nucleic acids research. DOI : 10.1093/nar/gkn853
2008
- Prediction of protein interaction based on similarity of phylogenetic trees.
Revista : Methods in molecular biology (Clifton, N.J.) DOI : 10.1007/978-1-59745-398-1_31
2007
- CARGO: a web portal to integrate customized biological information.
Revista : Nucleic Acids Research. DOI : 10.1093/nar/gkm280
2006
- Intelligent client for integrating bioinformatics services.
Oswaldo Trelles
Revista : Bioinformatics. DOI : 10.1093/bioinformatics/bti740
2005
- Evaluation of BioCreAtIvE assessment of task 2.
Revista : BMC Bioinformatics. D OI: 10.1186/1471-2105-6-S1-S16
- Text mining for metabolic pathways, signaling cascades, and protein networks.
Revista : Science's STKE. DOI : 10.1126/stke.2832005pe21